SyConn2
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SyConn API
SyConn2
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Index
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B
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C
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D
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E
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F
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H
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I
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J
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K
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L
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M
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V
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W
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X
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Z
A
acquire_obj_ids() (in module syconn.reps.segmentation_helper)
aggregate_segmentation_object_mappings() (in module syconn.proc.ssd_proc)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
allow_mesh_gen_cells (syconn.handler.config.DynConfig property)
allow_ssv_skel_gen (syconn.handler.config.DynConfig property)
append() (syconn.backend.storage.VoxelStorageL method)
apply_clahe() (in module syconn.proc.image)
apply_clahe_plain() (in module syconn.proc.image)
apply_equalhist() (in module syconn.proc.image)
apply_mapping_decision() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
apply_mapping_decisions() (in module syconn.proc.ssd_proc)
apply_merge_list() (in module syconn.extraction.object_extraction_steps)
apply_mergelist() (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
apply_morphological_operations() (in module syconn.proc.image)
apply_pca() (in module syconn.proc.image)
array2xls() (in module syconn.proc.stats)
arrtolz4string() (in module syconn.handler.compression)
arrtolz4string_list() (in module syconn.handler.compression)
assemble_from_mergelist() (in module syconn.reps.super_segmentation_helper)
assign_rep_values() (in module syconn.reps.rep_helper)
astrocyte_svagg_list_path (syconn.handler.config.DynConfig property)
astrocyte_svgraph_path() (syconn.handler.config.DynConfig method)
asym_label (syconn.handler.config.DynConfig property)
attr_dict (syconn.reps.segmentation.SegmentationObject attribute)
(syconn.reps.super_segmentation_object.SuperSegmentationObject attribute)
attr_dict_exists (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
attr_dict_path (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
attr_exists() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
attr_for_coords() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
AttributeDict (class in syconn.backend.storage)
average_node_axoness_views() (in module syconn.reps.super_segmentation_helper)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
axoness2mesh() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
axoness_for_coords() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
axoness_preds() (syconn.reps.segmentation.SegmentationObject method)
axoness_probas() (syconn.reps.segmentation.SegmentationObject method)
B
batchjob_enabled() (in module syconn.mp.batchjob_utils)
batchjob_fallback() (in module syconn.mp.batchjob_utils)
batchjob_script() (in module syconn.mp.batchjob_utils)
batchjob_script_folder (syconn.handler.config.DynConfig property)
bfs_smoothing() (in module syconn.proc.graphs)
binarize_labels() (in module syconn.handler.prediction)
BinarySearchStore (class in syconn.backend.storage)
bounding_box (syconn.proc.meshes.MeshObject property)
(syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
bss_get_attr_helper() (in module syconn.backend.storage)
BTBase (class in syconn.backend.base)
C
calc_center_of_mass() (in module syconn.reps.segmentation_helper)
calc_contact_syn_mesh() (in module syconn.proc.meshes)
calc_rot_matrices() (in module syconn.proc.meshes)
calculate_bounding_box() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
calculate_chunk_numbers_for_box() (in module syconn.extraction.object_extraction_wrapper)
calculate_rep_coord() (syconn.reps.segmentation.SegmentationObject method)
calculate_size() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
calculate_skeleton() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
cc_large_voxel_lists() (in module syconn.extraction.cs_processing_steps)
celltype() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
celltype_of_sso_nocache() (in module syconn.reps.super_segmentation_helper)
celltype_predictor() (in module syconn.reps.super_segmentation_object)
certainty_celltype() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
certainty_estimate() (in module syconn.handler.prediction)
chunk_pred() (in module syconn.handler.prediction)
chunkify() (in module syconn.handler.basics)
chunkify_contiguous() (in module syconn.proc.graphs)
chunkify_successive() (in module syconn.handler.basics)
chunkify_weighted() (in module syconn.handler.basics)
classify_synssv_objects() (in module syconn.extraction.cs_processing_steps)
clear_cache() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
close() (syconn.backend.storage.VoxelStorageLazyLoading method)
cluster_summary() (in module syconn.proc.stats)
cnn_axoness2skel() (in module syconn.reps.super_segmentation_helper)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
collect_properties_from_ssv_partners() (in module syconn.extraction.cs_processing_steps)
colorcode_vertices() (in module syconn.reps.rep_helper)
colors (syconn.proc.meshes.MeshObject property)
combine_and_split_cs() (in module syconn.extraction.cs_processing_steps)
combine_and_split_syn() (in module syconn.extraction.cs_processing_steps)
compartment_meshes (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
compartmentalize_mesh() (in module syconn.proc.meshes)
compartments_graph() (in module syconn.reps.super_segmentation_helper)
CompressedStorage (class in syconn.backend.storage)
config (syconn.reps.segmentation.SegmentationDataset property)
(syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
conn_comp() (in module syconn.proc.image)
connected_cluster_kdtree() (in module syconn.extraction.cs_processing_steps)
convert_coord() (in module syconn.reps.super_segmentation_helper)
convert_keys_byte2str() (in module syconn.handler.basics)
convert_nvox2ratio_mapdict() (in module syconn.proc.sd_proc)
coordpath2anno() (in module syconn.handler.basics)
(in module syconn.proc.graphs)
copy() (syconn.backend.base.FSBase method)
copy2dir() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
copy_intern() (syconn.backend.storage.AttributeDict method)
copy_ssvs2new_SSD_simple() (in module syconn.reps.super_segmentation_dataset)
create_ccsize_dict() (in module syconn.proc.graphs)
create_graph_from_coords() (in module syconn.proc.graphs)
create_h5_from_kzip() (in module syconn.handler.prediction)
create_h5_gt_file() (in module syconn.handler.prediction)
create_mapping_lookup_reverse() (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
create_new_skeleton() (in module syconn.reps.super_segmentation_helper)
create_new_skeleton_sv_fast() (in module syconn.reps.super_segmentation_helper)
create_sso_skeleton_fast() (in module syconn.reps.super_segmentation_helper)
create_sso_skeletons_wrapper() (in module syconn.reps.super_segmentation_helper)
create_syn_rfc() (in module syconn.extraction.cs_processing_steps)
createCLAHE() (in module syconn.proc.image)
crop_bool_array() (in module syconn.handler.basics)
(in module syconn.proc.general)
crop_box_to_bndry() (in module syconn.proc.mapping)
cs_partner (syconn.reps.segmentation.SegmentationObject property)
cut_array_in_one_dim() (in module syconn.proc.general)
D
data2kzip() (in module syconn.handler.basics)
dataset (syconn.reps.segmentation.SegmentationObject property)
dataset_analysis() (in module syconn.proc.sd_proc)
dataset_mm3 (syconn.proc.stats.FileTimer property)
dataset_nvoxels (syconn.proc.stats.FileTimer property)
dataset_shape (syconn.proc.stats.FileTimer property)
default_conf (syconn.handler.config.DynConfig property)
DelayedInterrupt (class in syconn.handler.basics)
delete_jobs_by_name() (in module syconn.mp.batchjob_utils)
dense_kzip_ids (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
dense_matrix() (in module syconn.proc.general)
dense_predicton_helper() (in module syconn.handler.prediction)
dense_predictor() (in module syconn.handler.prediction)
draw_glia_graph() (in module syconn.proc.graphs)
DynConfig (class in syconn.handler.config)
E
edgelist_path (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
enable_locking (syconn.reps.segmentation.SegmentationObject attribute)
enable_locking_so (syconn.reps.super_segmentation_object.SuperSegmentationObject attribute)
enable_property_cache() (syconn.reps.segmentation.SegmentationDataset method)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
entries (syconn.handler.config.DynConfig property)
equalizeHist() (in module syconn.proc.image)
eucl_dist() (in module syconn.proc.graphs)
exctract_ssv_morphology_embedding() (in module syconn.reps.super_segmentation_dataset)
exists (syconn.reps.segmentation.SegmentationDataset property)
export2kzip() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
export_cset_to_kd_batchjob() (in module syconn.extraction.object_extraction_steps)
export_matrix() (in module syconn.extraction.cs_processing_steps)
extract_contact_sites() (in module syconn.extraction.cs_extraction_steps)
extract_spinehead_volume_mesh() (in module syconn.reps.super_segmentation_helper)
F
fallback_exec() (in module syconn.mp.batchjob_utils)
fast_check_sing_comp() (in module syconn.proc.image)
FileTimer (class in syconn.proc.stats)
filter_relevant_syn() (in module syconn.extraction.cs_processing_steps)
filter_ssd_by_total_pathlength() (in module syconn.reps.super_segmentation_dataset)
find_contactsite() (in module syconn.proc.image)
find_incomplete_ssv_skeletons() (in module syconn.reps.super_segmentation_helper)
find_incomplete_ssv_views() (in module syconn.reps.super_segmentation_helper)
find_meshes() (in module syconn.proc.meshes)
find_missing_sv_attributes() (in module syconn.reps.segmentation_helper)
find_missing_sv_attributes_in_ssv() (in module syconn.reps.super_segmentation_helper)
find_missing_sv_skeletons() (in module syconn.reps.segmentation_helper)
find_missing_sv_views() (in module syconn.reps.segmentation_helper)
flatten() (in module syconn.handler.basics)
flatten_list() (in module syconn.handler.basics)
from_netkx_to_arr() (in module syconn.reps.super_segmentation_helper)
from_netkx_to_sso() (in module syconn.reps.super_segmentation_helper)
from_probabilities_to_kd() (in module syconn.extraction.object_extraction_wrapper)
from_sso_to_netkx_fast() (in module syconn.reps.super_segmentation_helper)
FSBase (class in syconn.backend.base)
fscore() (in module syconn.proc.stats)
G
gauss_threshold_connected_components() (in module syconn.extraction.object_extraction_steps)
gen_mesh_voxelmask() (in module syconn.proc.meshes)
generate_default_conf() (in module syconn.handler.config)
generate_skeleton_sv() (in module syconn.reps.segmentation_helper)
generate_subcell_kd_from_proba() (in module syconn.extraction.object_extraction_wrapper)
get_aniso_struct() (in module syconn.proc.image)
get_attributes() (syconn.backend.storage.BinarySearchStore method)
get_available_ssv_ids() (in module syconn.proc.ssd_proc)
get_boundingdata() (syconn.backend.storage.VoxelStorageDyn method)
get_celltype_model_e3() (in module syconn.handler.prediction)
get_filepaths_from_dir() (in module syconn.handler.basics)
get_glia_coverage() (in module syconn.proc.mapping)
get_glia_model_e3() (in module syconn.handler.prediction)
get_glia_paths() (in module syconn.proc.graphs)
get_glianess_dict() (in module syconn.proc.graphs)
get_knn_tnet_embedding_e3() (in module syconn.handler.prediction)
get_myelin_cnn() (in module syconn.handler.prediction)
get_object_mesh() (in module syconn.proc.meshes)
get_path_density_seg_obj() (in module syconn.reps.super_segmentation_dataset)
get_paths_of_skelID() (in module syconn.handler.basics)
get_pca_tnet_embedding_e3() (in module syconn.handler.prediction)
get_pca_view_hists() (in module syconn.reps.super_segmentation_helper)
get_random_centered_coords() (in module syconn.proc.meshes)
get_sd_load_distribution() (in module syconn.reps.segmentation_helper)
get_seg_dataset() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
get_seg_obj() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
get_seg_objects() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
get_segmentation_object() (syconn.reps.segmentation.SegmentationDataset method)
get_segmentationdataset() (syconn.reps.segmentation.SegmentationDataset method)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
get_semseg_axon_model() (in module syconn.handler.prediction)
get_semseg_spiness_model() (in module syconn.handler.prediction)
get_skelID_from_path() (in module syconn.handler.basics)
get_spine_compartments() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
get_sso_axoness_from_coord() (in module syconn.reps.super_segmentation_helper)
get_sso_view_dc() (in module syconn.proc.rendering)
get_super_segmentation_object() (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
get_total_edge_lengths() (in module syconn.reps.super_segmentation_dataset)
get_tripletnet_model_e3() (in module syconn.handler.prediction)
get_unique_subfold_ixs() (in module syconn.reps.rep_helper)
get_volume() (syconn.reps.segmentation.SegmentationDataset method)
get_voxel_cache() (syconn.backend.storage.VoxelStorageDyn method)
get_voxel_data_cubed() (syconn.backend.storage.VoxelStorageDyn method)
get_voxeldata() (syconn.backend.storage.VoxelStorageDyn method)
get_voxelmask_offset() (syconn.backend.storage.VoxelStorageDyn method)
glia_loader_helper() (in module syconn.proc.graphs)
glia_path_length() (in module syconn.proc.graphs)
glia_pred() (syconn.reps.segmentation.SegmentationObject method)
glia_pred_exists() (in module syconn.reps.super_segmentation_helper)
glia_pred_so() (in module syconn.reps.segmentation_helper)
glia_proba() (syconn.reps.segmentation.SegmentationObject method)
glia_proba_so() (in module syconn.reps.segmentation_helper)
gliapred2mergelist() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
gliapred2mesh() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
gliapred_sso_nocache() (in module syconn.reps.super_segmentation_helper)
gliaprobas2mesh() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
gliasplit() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
gliasplit2mesh() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
group_ids_to_so_storage() (in module syconn.handler.basics)
H
hist() (in module syconn.proc.stats)
I
id (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
id_array (syconn.backend.storage.BinarySearchStore property)
identifier (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
ids (syconn.reps.segmentation.SegmentationDataset property)
increase_object_size() (syconn.backend.storage.VoxelStorageDyn method)
init_cell_subcell_sds() (in module syconn.exec.exec_init)
init_sos() (in module syconn.proc.sd_proc)
init_ssd_from_kzips() (in module syconn.proc.ssd_assembly)
init_sso_from_kzip() (in module syconn.proc.ssd_assembly)
init_ssv() (in module syconn.proc.ssd_proc)
init_svgraph_path (syconn.handler.config.DynConfig property)
initialize_logging() (in module syconn.handler.config)
int2str_converter() (in module syconn.handler.prediction)
invert_mdc() (in module syconn.proc.sd_proc)
items() (syconn.backend.base.FSBase method)
iter_so_dir_paths() (syconn.reps.segmentation.SegmentationDataset method)
iter_voxelmask_offset() (syconn.backend.storage.VoxelStorageDyn method)
ix_from_subfold() (in module syconn.reps.rep_helper)
ix_from_subfold_new() (in module syconn.reps.rep_helper)
ix_from_subfold_OLD() (in module syconn.reps.rep_helper)
J
jobstates_slurm() (in module syconn.mp.batchjob_utils)
K
kd_asym_path (syconn.handler.config.DynConfig property)
kd_er_path (syconn.handler.config.DynConfig property)
kd_factory() (in module syconn.handler.basics)
kd_golgi_path (syconn.handler.config.DynConfig property)
kd_init() (in module syconn.exec.exec_init)
kd_mi_path (syconn.handler.config.DynConfig property)
kd_organelle_seg_paths (syconn.handler.config.DynConfig property)
kd_organelles_paths (syconn.handler.config.DynConfig property)
kd_seg_path (syconn.handler.config.DynConfig property)
kd_sj_path (syconn.handler.config.DynConfig property)
kd_sym_path (syconn.handler.config.DynConfig property)
kd_vc_path (syconn.handler.config.DynConfig property)
keys() (syconn.backend.base.FSBase method)
(syconn.backend.storage.VoxelStorageDyn method)
(syconn.backend.storage.VoxelStorageLazyLoading method)
knn_clf_tnet_embedding() (in module syconn.handler.prediction)
knossos_ml_from_ccs() (in module syconn.reps.rep_helper)
knossos_ml_from_sso() (in module syconn.reps.rep_helper)
knossos_ml_from_svixs() (in module syconn.reps.rep_helper)
L
label_array_for_sso_skel() (in module syconn.reps.super_segmentation_helper)
label_dict() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
load_attr_dict() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
load_attributes() (syconn.reps.segmentation.SegmentationObject method)
load_from_h5py() (in module syconn.handler.compression)
load_gt_from_kzip() (in module syconn.handler.prediction)
load_lz4_compressed() (in module syconn.handler.compression)
load_mapping_dict() (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
load_mesh() (in module syconn.reps.segmentation_helper)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
load_numpy_data() (syconn.reps.segmentation.SegmentationDataset method)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
load_pkl2obj() (in module syconn.handler.basics)
load_rendering_func() (in module syconn.proc.rendering)
load_skeleton() (in module syconn.reps.segmentation_helper)
(syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
load_so_attr_bulk() (in module syconn.reps.segmentation_helper)
load_so_attributes() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
load_so_meshes_bulk() (in module syconn.reps.segmentation_helper)
load_so_voxels_bulk() (in module syconn.reps.segmentation_helper)
load_sv_edgelist() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
load_sv_graph() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
load_version_dict() (syconn.reps.segmentation.SegmentationDataset method)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
load_views() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
load_voxel_list() (in module syconn.reps.segmentation_helper)
(syconn.reps.segmentation.SegmentationObject method)
load_voxel_list_downsampled() (in module syconn.reps.segmentation_helper)
(syconn.reps.segmentation.SegmentationObject method)
load_voxel_list_downsampled_adapt() (in module syconn.reps.segmentation_helper)
(syconn.reps.segmentation.SegmentationObject method)
load_voxels() (syconn.reps.segmentation.SegmentationObject method)
load_voxels_depr() (in module syconn.reps.segmentation_helper)
load_voxels_downsampled() (in module syconn.reps.segmentation_helper)
(in module syconn.reps.super_segmentation_dataset)
(in module syconn.reps.super_segmentation_helper)
(syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
locations_path (syconn.reps.segmentation.SegmentationObject property)
lookup_in_attribute_dict() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
lz4string_listtoarr() (in module syconn.handler.compression)
lz4stringtoarr() (in module syconn.handler.compression)
M
majority_element_1d() (in module syconn.handler.basics)
majority_vote() (in module syconn.reps.super_segmentation_helper)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
majority_vote_compartments() (in module syconn.reps.super_segmentation_helper)
majorityvote_skeleton_property() (in module syconn.reps.super_segmentation_helper)
make_merge_list() (in module syconn.extraction.object_extraction_steps)
make_stitch_list() (in module syconn.extraction.object_extraction_steps)
make_unique_labels() (in module syconn.extraction.object_extraction_steps)
map_glia_fraction() (in module syconn.proc.mapping)
map_myelin2coords() (in module syconn.reps.super_segmentation_helper)
map_myelin_global() (in module syconn.exec.exec_skeleton)
map_objects_from_synssv_partners() (in module syconn.extraction.cs_processing_steps)
map_subcell_extract_props() (in module syconn.proc.sd_proc)
map_synssv_objects() (in module syconn.proc.ssd_proc)
map_synssv_objects_thread() (in module syconn.proc.ssd_proc)
mapping_dict (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
mapping_dict_exists (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
mapping_dict_path (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
mapping_lookup_reverse (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
mapping_lookup_reverse_path (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
merge_map_dicts() (in module syconn.proc.sd_proc)
merge_meshes() (in module syconn.proc.meshes)
merge_meshes_dict() (in module syconn.proc.sd_proc)
merge_meshes_incl_norm() (in module syconn.proc.meshes)
merge_meshes_single() (in module syconn.proc.sd_proc)
merge_nodes() (in module syconn.proc.graphs)
merge_prop_dicts() (in module syconn.proc.sd_proc)
merge_someshes() (in module syconn.proc.meshes)
mergelist2kzip() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
mesh (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
mesh2file() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
mesh2kzip() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
mesh2obj_file() (in module syconn.proc.meshes)
mesh_area (syconn.reps.segmentation.SegmentationObject property)
mesh_area_calc() (in module syconn.proc.meshes)
mesh_bb (syconn.reps.segmentation.SegmentationObject property)
mesh_caching (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
mesh_chunk() (in module syconn.proc.meshes)
mesh_creator_sso() (in module syconn.proc.meshes)
mesh_dc_path (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
mesh_exists (syconn.reps.segmentation.SegmentationObject property)
mesh_exists() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
mesh_from_scratch() (syconn.reps.segmentation.SegmentationObject method)
mesh_path (syconn.reps.segmentation.SegmentationObject property)
mesh_proc_chunked() (in module syconn.proc.sd_proc)
mesh_proc_ssv() (in module syconn.proc.ssd_proc)
mesh_size (syconn.reps.segmentation.SegmentationObject property)
meshes2kzip() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
MeshObject (class in syconn.proc.meshes)
MeshStorage (class in syconn.backend.storage)
mi_ids (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
mi_mesh (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
mis (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
model_dir (syconn.handler.config.DynConfig property)
model_performance() (in module syconn.proc.stats)
model_performance_predonly() (in module syconn.proc.stats)
module
syconn.backend.base
syconn.backend.storage
syconn.exec.exec_inference
syconn.exec.exec_init
syconn.exec.exec_skeleton
syconn.exec.exec_syns
syconn.extraction.cs_extraction_steps
syconn.extraction.cs_processing_steps
syconn.extraction.object_extraction_steps
syconn.extraction.object_extraction_wrapper
syconn.handler.basics
syconn.handler.compression
syconn.handler.config
syconn.handler.logger
syconn.handler.prediction
syconn.mp.batchjob_utils
syconn.mp.mp_utils
syconn.proc.general
syconn.proc.graphs
syconn.proc.image
syconn.proc.mapping
syconn.proc.meshes
syconn.proc.rendering
syconn.proc.sd_proc
syconn.proc.ssd_assembly
syconn.proc.ssd_proc
syconn.proc.stats
syconn.reps.rep_helper
syconn.reps.segmentation
syconn.reps.segmentation_helper
syconn.reps.super_segmentation
syconn.reps.super_segmentation_dataset
syconn.reps.super_segmentation_helper
syconn.reps.super_segmentation_object
morphembed2mesh() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
mpath_axonsem (syconn.handler.config.DynConfig property)
mpath_celltype_e3 (syconn.handler.config.DynConfig property)
mpath_celltype_pts (syconn.handler.config.DynConfig property)
mpath_compartment_pts (syconn.handler.config.DynConfig property)
mpath_er (syconn.handler.config.DynConfig property)
mpath_glia_e3 (syconn.handler.config.DynConfig property)
mpath_glia_pts (syconn.handler.config.DynConfig property)
mpath_golgi (syconn.handler.config.DynConfig property)
mpath_mivcsj (syconn.handler.config.DynConfig property)
mpath_myelin (syconn.handler.config.DynConfig property)
mpath_spiness (syconn.handler.config.DynConfig property)
mpath_syn_rfc (syconn.handler.config.DynConfig property)
mpath_syn_rfc_fallback (syconn.handler.config.DynConfig property)
mpath_syntype (syconn.handler.config.DynConfig property)
mpath_tnet (syconn.handler.config.DynConfig property)
mpath_tnet_pts (syconn.handler.config.DynConfig property)
mpath_tnet_pts_wholecell (syconn.handler.config.DynConfig property)
multi_dilation() (in module syconn.proc.image)
multi_dilation_backgroundonly() (in module syconn.proc.image)
multi_helper_obj() (in module syconn.mp.mp_utils)
multi_mop() (in module syconn.proc.image)
multi_mop_backgroundonly() (in module syconn.proc.image)
multi_probas_saver() (in module syconn.proc.sd_proc)
N
n_folders_fs (syconn.reps.segmentation.SegmentationDataset property)
(syconn.reps.segmentation.SegmentationObject property)
n_shards (syconn.backend.storage.BinarySearchStore property)
naive_view_normalization() (in module syconn.handler.prediction)
naive_view_normalization_new() (in module syconn.handler.prediction)
nb_cpus (syconn.reps.super_segmentation_object.SuperSegmentationObject attribute)
ncore_total (syconn.handler.config.DynConfig property)
neuron_svagg_list_path (syconn.handler.config.DynConfig property)
neuron_svgraph_path (syconn.handler.config.DynConfig property)
ngpu_total (syconn.handler.config.DynConfig property)
nodes_in_pathlength() (in module syconn.reps.super_segmentation_helper)
nodestates_slurm() (in module syconn.mp.batchjob_utils)
normalize_img() (in module syconn.proc.image)
normalize_vol() (in module syconn.proc.image)
normals (syconn.proc.meshes.MeshObject property)
normals_resh (syconn.proc.meshes.MeshObject property)
number_of_running_processes() (in module syconn.mp.batchjob_utils)
nxGraph2kzip() (in module syconn.proc.graphs)
O
object_caching (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
object_repcoord() (syconn.backend.storage.VoxelStorageDyn method)
object_segmentation() (in module syconn.extraction.object_extraction_steps)
object_size() (syconn.backend.storage.VoxelStorageDyn method)
objects_dense_kzip_path (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
overlaycubes2kzip() (in module syconn.handler.prediction)
P
parallel_process() (in module syconn.mp.mp_utils)
parse_cc_dict_from_g() (in module syconn.handler.basics)
parse_cc_dict_from_kml() (in module syconn.handler.basics)
parse_cc_dict_from_kzip() (in module syconn.handler.basics)
parse_movement_area_from_zip() (in module syconn.handler.prediction)
partition_cc() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
path (syconn.reps.segmentation.SegmentationDataset property)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
path_density_seg_obj() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
path_ids (syconn.reps.segmentation.SegmentationDataset property)
path_rep_coords (syconn.reps.segmentation.SegmentationDataset property)
path_sizes (syconn.reps.segmentation.SegmentationDataset property)
pca_tnet_embedding() (in module syconn.handler.prediction)
perform_pca_rotation() (syconn.proc.meshes.MeshObject method)
pklskel2kzip() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
plot_pr() (in module syconn.proc.stats)
prase_cc_dict_from_txt() (in module syconn.handler.basics)
pred_dataset() (in module syconn.handler.prediction)
pred_sv_chunk_semseg() (in module syconn.reps.super_segmentation_helper)
pred_svs_semseg() (in module syconn.reps.super_segmentation_helper)
predict_cell_morphology_pts() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
predict_celltype_multiview() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
predict_dense_to_kd() (in module syconn.handler.prediction)
predict_h5() (in module syconn.handler.prediction)
predict_kzip() (in module syconn.handler.prediction)
predict_semseg() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
predict_sos_views() (in module syconn.proc.sd_proc)
predict_sso_celltype() (in module syconn.reps.super_segmentation_helper)
predict_views() (in module syconn.proc.sd_proc)
predict_views_axoness() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
predict_views_embedding() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
predict_views_gliaSV() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
predict_views_semseg() (in module syconn.reps.super_segmentation_helper)
prediction_helper() (in module syconn.handler.prediction)
prepare_report() (syconn.proc.stats.FileTimer method)
prepare_so_attr_cache() (in module syconn.reps.segmentation_helper)
prepare_vol_info() (syconn.proc.stats.FileTimer method)
preprocess() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
prior_astrocyte_removal (syconn.handler.config.DynConfig property)
projection_pca() (in module syconn.proc.stats)
projection_tSNE() (in module syconn.proc.stats)
prune_stub_branches() (in module syconn.reps.super_segmentation_helper)
pruned_svagg_list_path (syconn.handler.config.DynConfig property)
pruned_svgraph_path (syconn.handler.config.DynConfig property)
pull() (syconn.backend.base.FSBase method)
(syconn.backend.storage.VoxelStorageLazyLoading method)
push() (syconn.backend.base.FSBase method)
(syconn.backend.storage.VoxelStorageDyn method)
(syconn.backend.storage.VoxelStorageLazyLoading method)
Q
qsub_work_folder (syconn.handler.config.DynConfig property)
R
radius_correction_found_vertices() (in module syconn.reps.super_segmentation_helper)
rag (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
read_mesh_from_zip() (in module syconn.handler.basics)
read_meshes_from_zip() (in module syconn.handler.basics)
read_txt_from_zip() (in module syconn.handler.basics)
remove_from_zip() (in module syconn.handler.basics)
remove_glia_nodes() (in module syconn.proc.graphs)
remove_outlier() (in module syconn.proc.image)
render_indexviews() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
render_mesh() (in module syconn.proc.rendering)
render_mesh_coords() (in module syconn.proc.rendering)
render_ortho_views_vis() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
render_sampled_sos_cc() (in module syconn.reps.super_segmentation_object)
render_sampled_sso() (in module syconn.proc.rendering)
render_so() (in module syconn.reps.super_segmentation_object)
render_sso_coords() (in module syconn.proc.rendering)
render_sso_coords_index_views() (in module syconn.proc.rendering)
render_sso_coords_label_views() (in module syconn.proc.rendering)
render_sso_coords_multiprocessing() (in module syconn.proc.rendering)
render_views() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
renormalize_vertices() (syconn.proc.meshes.MeshObject method)
rep_coord (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
rep_coords (syconn.reps.segmentation.SegmentationDataset property)
restart_nodes_daemon() (in module syconn.mp.batchjob_utils)
retransform_external_coords() (syconn.proc.meshes.MeshObject method)
rgb2gray() (in module syconn.proc.image)
run_astrocyte_prediction() (in module syconn.exec.exec_inference)
run_astrocyte_prediction_pts() (in module syconn.exec.exec_inference)
run_astrocyte_splitting() (in module syconn.exec.exec_inference)
run_cell_embedding() (in module syconn.exec.exec_inference)
run_celltype_prediction() (in module syconn.exec.exec_inference)
run_create_neuron_ssd() (in module syconn.exec.exec_init)
run_create_rag() (in module syconn.exec.exec_init)
run_cs_ssv_generation() (in module syconn.exec.exec_syns)
run_kimimaro_skeletonization() (in module syconn.exec.exec_skeleton)
run_matrix_export() (in module syconn.exec.exec_syns)
run_morphology_embedding() (in module syconn.exec.exec_inference)
run_semsegaxoness_prediction() (in module syconn.exec.exec_inference)
run_semsegspiness_prediction() (in module syconn.exec.exec_inference)
run_skeleton_generation() (in module syconn.exec.exec_skeleton)
run_skeleton_generation_fallback() (in module syconn.exec.exec_skeleton)
run_spinehead_volume_calc() (in module syconn.exec.exec_syns)
run_syn_generation() (in module syconn.exec.exec_syns)
S
safe_copy() (in module syconn.handler.basics)
sample_locations() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
sample_locations_exist (syconn.reps.segmentation.SegmentationObject property)
save_attr_dict() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
save_attributes() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
save_dataset_deep() (in module syconn.reps.super_segmentation_dataset)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
save_dataset_shallow() (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
save_kzip() (syconn.reps.segmentation.SegmentationObject method)
save_lz4_compressed() (in module syconn.handler.compression)
save_mapping_dict() (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
save_objects_to_kzip_dense() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
save_objects_to_kzip_sparse() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
save_skeleton() (in module syconn.reps.segmentation_helper)
(syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
save_skeleton_to_kzip() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
save_to_h5py() (in module syconn.handler.compression)
save_version_dict() (syconn.reps.segmentation.SegmentationDataset method)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
save_view_pca_proj() (in module syconn.reps.super_segmentation_helper)
save_views() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
save_voxels() (in module syconn.reps.segmentation_helper)
scaling (syconn.reps.segmentation.SegmentationDataset property)
(syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
sd_init() (in module syconn.exec.exec_init)
segds_dir (syconn.reps.segmentation.SegmentationObject property)
SegmentationBase (class in syconn.reps.rep_helper)
SegmentationDataset (class in syconn.reps.segmentation)
SegmentationObject (class in syconn.reps.segmentation)
segobj_dir (syconn.reps.segmentation.SegmentationObject property)
semseg2mesh() (in module syconn.reps.super_segmentation_helper)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
semseg2mesh_counter() (in module syconn.reps.super_segmentation_helper)
semseg_for_coords() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
semseg_of_sso_nocache() (in module syconn.reps.super_segmentation_helper)
semsegaxoness2skel() (in module syconn.reps.super_segmentation_object)
semsegaxoness_predictor() (in module syconn.reps.super_segmentation_object)
semsegspiness_predictor() (in module syconn.reps.super_segmentation_object)
set_object_repcoord() (syconn.backend.storage.VoxelStorageDyn method)
set_voxel_cache() (syconn.backend.storage.VoxelStorageDyn method)
shape (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
shortestpath2soma() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
single_conn_comp() (in module syconn.proc.image)
single_conn_comp_img() (in module syconn.proc.image)
size (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
sizes (syconn.reps.segmentation.SegmentationDataset property)
sj_ids (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
sj_mesh (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
sjs (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
skeleton (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject attribute)
skeleton_caching (syconn.reps.segmentation.SegmentationObject property)
skeleton_dict_path (syconn.reps.segmentation.SegmentationObject property)
skeleton_exists (syconn.reps.segmentation.SegmentationObject property)
skeleton_kzip_path (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
skeleton_kzip_path_views (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
skeleton_path (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
SkeletonStorage (class in syconn.backend.storage)
skelnode_comment_dict() (in module syconn.reps.super_segmentation_helper)
skelproperty2mesh() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
so_dir_paths (syconn.reps.segmentation.SegmentationDataset property)
so_storage_path (syconn.reps.segmentation.SegmentationDataset property)
(syconn.reps.segmentation.SegmentationObject property)
so_storage_path_base (syconn.reps.segmentation.SegmentationDataset property)
(syconn.reps.segmentation.SegmentationObject property)
soid2ix (syconn.reps.segmentation.SegmentationDataset property)
sos (syconn.reps.segmentation.SegmentationDataset property)
sos_dict_fact() (in module syconn.proc.sd_proc)
sparsify_skeleton_fast() (in module syconn.reps.super_segmentation_helper)
split_component() (syconn.reps.segmentation.SegmentationObject method)
split_glia() (in module syconn.proc.graphs)
split_glia_graph() (in module syconn.proc.graphs)
split_ssv() (in module syconn.proc.ssd_proc)
split_subcc() (in module syconn.proc.graphs)
split_subcc_join() (in module syconn.proc.graphs)
ssd_dir (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
ssd_kwargs (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
sso_caching (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset attribute)
sso_locking (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset attribute)
sso_svgraph2kzip() (in module syconn.reps.super_segmentation_helper)
sso_views_to_modelinput() (in module syconn.reps.super_segmentation_helper)
ssv_dir (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
ssv_ids (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
ssv_kwargs (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
ssvs (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
start() (syconn.proc.stats.FileTimer method)
start_multiprocess() (in module syconn.mp.mp_utils)
start_multiprocess_imap() (in module syconn.mp.mp_utils)
start_multiprocess_obj() (in module syconn.mp.mp_utils)
stitch_skel_nx() (in module syconn.proc.graphs)
stop() (syconn.proc.stats.FileTimer method)
store_path_densities_seg_objs() (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
store_total_edge_lengths() (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
str2int_converter() (in module syconn.handler.prediction)
str_delta_sec() (in module syconn.handler.basics)
subfold_from_ix() (in module syconn.reps.rep_helper)
subfold_from_ix_new() (in module syconn.reps.rep_helper)
subfold_from_ix_OLD() (in module syconn.reps.rep_helper)
subfold_from_ix_SSO() (in module syconn.reps.rep_helper)
SuperSegmentationDataset (class in syconn.reps.super_segmentation_dataset)
SuperSegmentationObject (class in syconn.reps.super_segmentation_object)
surface_samples() (in module syconn.reps.rep_helper)
sv2ssv_ids() (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset method)
sv_attr_exists() (in module syconn.reps.segmentation_helper)
sv_graph_uint (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
sv_ids (syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
sv_skeleton_missing() (in module syconn.reps.segmentation_helper)
sv_view_exists() (in module syconn.reps.segmentation_helper)
svgraph2kzip() (in module syconn.proc.graphs)
svprobas2mergelist() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
svs (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
switch_array_entries() (in module syconn.handler.basics)
syconn.backend.base
module
syconn.backend.storage
module
syconn.exec.exec_inference
module
syconn.exec.exec_init
module
syconn.exec.exec_skeleton
module
syconn.exec.exec_syns
module
syconn.extraction.cs_extraction_steps
module
syconn.extraction.cs_processing_steps
module
syconn.extraction.object_extraction_steps
module
syconn.extraction.object_extraction_wrapper
module
syconn.handler.basics
module
syconn.handler.compression
module
syconn.handler.config
module
syconn.handler.logger
module
syconn.handler.prediction
module
syconn.mp.batchjob_utils
module
syconn.mp.mp_utils
module
syconn.proc.general
module
syconn.proc.graphs
module
syconn.proc.image
module
syconn.proc.mapping
module
syconn.proc.meshes
module
syconn.proc.rendering
module
syconn.proc.sd_proc
module
syconn.proc.ssd_assembly
module
syconn.proc.ssd_proc
module
syconn.proc.stats
module
syconn.reps.rep_helper
module
syconn.reps.segmentation
module
syconn.reps.segmentation_helper
module
syconn.reps.super_segmentation
module
syconn.reps.super_segmentation_dataset
module
syconn.reps.super_segmentation_helper
module
syconn.reps.super_segmentation_object
module
sym_label (syconn.handler.config.DynConfig property)
syn_sign_ratio() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
syn_sign_ratio_celltype() (in module syconn.reps.super_segmentation_helper)
syn_ssv (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
syn_ssv_mesh (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
synssv_o_featurenames() (in module syconn.extraction.cs_processing_steps)
synssv_o_features() (in module syconn.extraction.cs_processing_steps)
syntype_available (syconn.handler.config.DynConfig property)
T
temp_path (syconn.handler.config.DynConfig property)
temp_seed() (in module syconn.handler.basics)
texts2kzip() (in module syconn.handler.basics)
timeit() (in module syconn.proc.general)
to_knossos_dataset() (in module syconn.handler.prediction)
total_edge_length() (syconn.reps.segmentation.SegmentationObject method)
(syconn.reps.super_segmentation_object.SuperSegmentationObject method)
transform_external_coords() (syconn.proc.meshes.MeshObject method)
type (syconn.reps.segmentation.SegmentationDataset property)
(syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
typedsyns2mesh() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
U
update() (syconn.backend.base.FSBase method)
(syconn.backend.storage.AttributeDict method)
use_kimimaro (syconn.handler.config.DynConfig property)
use_new_meshing (syconn.handler.config.DynConfig property)
use_new_renderings_locs (syconn.handler.config.DynConfig property)
use_new_subfold (syconn.handler.config.DynConfig property)
use_onthefly_views (syconn.handler.config.DynConfig property)
use_point_models (syconn.handler.config.DynConfig property)
V
values() (syconn.backend.base.FSBase method)
vc_ids (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
vc_mesh (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
vcs (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
version (syconn.reps.segmentation.SegmentationDataset property)
(syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
version_dict (syconn.reps.super_segmentation_object.SuperSegmentationObject attribute)
version_dict_exists (syconn.reps.segmentation.SegmentationDataset property)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
version_dict_path (syconn.reps.segmentation.SegmentationDataset property)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
vert_resh (syconn.proc.meshes.MeshObject property)
vertices_scaled (syconn.proc.meshes.MeshObject property)
view_caching (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
view_dict (syconn.reps.super_segmentation_object.SuperSegmentationObject attribute)
view_embedding_of_sso_nocache() (in module syconn.reps.super_segmentation_helper)
view_existence() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
view_path (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
view_path() (syconn.reps.segmentation.SegmentationObject method)
views() (syconn.reps.segmentation.SegmentationObject method)
views2tripletinput() (in module syconn.handler.prediction)
(in module syconn.reps.super_segmentation_helper)
views_exist() (syconn.reps.segmentation.SegmentationObject method)
vlabel_dc_path (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
voxel_caching (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
voxel_list (syconn.reps.segmentation.SegmentationObject property)
voxel_path (syconn.reps.segmentation.SegmentationObject property)
voxels (syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
voxels_exist (syconn.reps.segmentation.SegmentationObject property)
voxels_xy_downsampled (syconn.reps.super_segmentation_object.SuperSegmentationObject property)
VoxelStorage() (in module syconn.backend.storage)
VoxelStorageClass (class in syconn.backend.storage)
VoxelStorageDyn (class in syconn.backend.storage)
VoxelStorageL (class in syconn.backend.storage)
VoxelStorageLazyLoading (class in syconn.backend.storage)
W
weighted_graph() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
working_dir (syconn.handler.config.DynConfig property)
(syconn.reps.segmentation.SegmentationDataset property)
(syconn.reps.segmentation.SegmentationObject property)
(syconn.reps.super_segmentation_dataset.SuperSegmentationDataset property)
(syconn.reps.super_segmentation_object.SuperSegmentationObject property)
write_axpred_cnn() (in module syconn.reps.super_segmentation_helper)
write_axpred_rfc() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
write_conn_gt_kzips() (in module syconn.extraction.cs_processing_steps)
write_data2kzip() (in module syconn.handler.basics)
write_gliapred_cnn() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
write_locations2kzip() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
write_mesh2kzip() (in module syconn.proc.meshes)
write_meshes2kzip() (in module syconn.proc.meshes)
write_obj2pkl() (in module syconn.handler.basics)
write_sopath2skeleton() (in module syconn.proc.graphs)
write_sv_views_chunked() (in module syconn.proc.rendering)
write_svmeshes2kzip() (syconn.reps.super_segmentation_object.SuperSegmentationObject method)
write_txt2kzip() (in module syconn.handler.basics)
X
xyz2zxy() (in module syconn.handler.prediction)
xyz2zyx() (in module syconn.handler.prediction)
Z
zxy2xyz() (in module syconn.handler.prediction)
zyx2xyz() (in module syconn.handler.prediction)
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